SEGS

Download gene expression data


All of the following datasets are produced by Affymetrix gene chips. These annotation files are needed if you want to translate the probe names (rows, genes) into ENTREZ gene identifiers (integers). The first column of the first row of the "flat format" files identifies which affimetrix file to be used for translation. The remaining columns in the first row represent the labels of the samples. The remaining numbers in the "flat format" files are log scaled values of the genes expression.

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ALL vs. AML

Molecular Classification of Cancer: Class Discovery and Class Prediction
by Gene Expression Monitoring

Golub et al., Science 286:5439, p531-p537, 1999.
[Paper] [description, traning, test, class labels] [flat format]
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7 subtypes of ALL

Classification of pediatric acute lymphoblastic leukemia
by gene expression profiling

Ross et al., Blood, 102:6, p2951p2959, 2003.
[Paper] [original data] [flat format]
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14 types of cancers

Multiclass cancer diagnosis using tumor gene expression signatures
Ramaswamy et al., PNAS, 98:26, p15149-p15154, 2001.
[Paper] [training, training] [flat format]
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DLBCL

Diffuse large B-cell lymphoma outcome prediction by
gene-expression profiling and supervised machine learning

Shipp et al., Nature Medicine, 8:1, p68-p74, 2002.
[Paper] [original data] [flat format]
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Prostate cancer

Gene expression correlates of clinical prostate cancer behavior
Singh et al., Cancer Cell, vol. 1, p203-p209, 2002.
[Paper] [original data] [flat format]